PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G056600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 395aa    MW: 39438.8 Da    PI: 6.1569
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G056600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.34.8e-12200245555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Brast07G056600.1.p 200 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 245
                         99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.2E-17193255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.36E-13193249No hitNo description
PROSITE profilePS5088817.282195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-16197254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-9200245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-13201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MAGGGGDGGG GAQDDFFDQM LSTLPSAWGD LGAGGKSPWE LPAGGEDLSA FDESALLASR  60
LRQHQIGGGG GEGKPAVMLQ LTDLQRQQQG EESGGFSPLP LFTDRSPPPS SARDDMDGGF  120
IKSPNNATGG DHAMFNGFGA AHGGAGAVQP PFGQGGSMSG QSFGGTAASG GTAAPASSGG  180
AAPPRQTRVR ARRGQATDPH SIAERLRRER IAERMKSLQE LVPNANKTDK ASMLDEIIDY  240
VKFLQLQVKV LSMSRLGGAA GMAPLVASMS SEANSSNAKS GGGAGAAATT NGNGGEKSGG  300
GAGLRVTEQQ VAKMMEEDMG TAMQYLQGKG LCLMPISLAS AISSATTTTG ASPASLLARP  360
PPVRSSPQAA SGAAGAGDDA VARPVKVDAN GGKQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560994.10.0PREDICTED: transcription factor bHLH82
SwissprotQ9ZUG92e-75BH066_ARATH; Transcription factor bHLH66
TrEMBLI1H0C60.0I1H0C6_BRADI; Uncharacterized protein
STRINGBRADI1G47350.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.18e-47LJRHL1-like 3